Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs59317972 chr6:133118936 C/CG 0 500 31.43 35.2 29.05 KM Plot
THCA rs59323735 chr18:13822366 G/A 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs59458664 chr2:234347044 A/G 1.13E-5 500 31.73 31 11.33 KM Plot
THCA rs59490468 chr8:58056322 G/T 1.98E-6 492 31.28 35.88 34.8 KM Plot
THCA rs59550850 chr2:238408727 A/G 0 497 31.15 33.5 39.2 KM Plot
THCA rs59666842 chr18:13822309 A/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs596940 chr12:123560731 T/C 1.53E-5 499 31.47 31.87 14.43 KM Plot
THCA rs59740783 chr6:133231711 G/A 8.06E-7 498 31.42 32.67 24.42 KM Plot
THCA rs59797645 chr6:162397087 G/A 0.000103 501 31.22 32.77 14.08 KM Plot
THCA rs59948872 chr19:9828255 C/T 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs59958456 chr7:32803116 G/T 0.000102 500 31.45 31.47 32.1 KM Plot
THCA rs59970246 chr2:238410952 T/C 0 496 31.27 33.5 39.2 KM Plot
THCA rs60135853 chr8:58010742 TTCC/T 6.89E-6 500 31.3 36.17 36.93 KM Plot
THCA rs60165246 chr2:234165659 TTTTTGTTTTG/TTTTTG 1.25E-6 494 31.45 32.9 27.42 KM Plot
THCA rs60181496 chr4:3364388 C/G 5.36E-5 494 26.45 31.62 33.08 KM Plot